5 steps to Transform your Lab into an Automated Workspace!

Today’s laboratories work with a range of information sources – from samples, results, tests, storage, budget, client’s requests and so on. In this way, information finds itself at the heart of a lab, and is crucial for efficient research. Automation and digitalization of the workspace can therefore help labs to manage this large amount of information. Labiotech, in collaboration with AgileBio, brings you a quick 5-step guide to know the basics of Lab Automation!

Step 1: Choose a LIMS

You may have heard of LIMS, or Laboratory Information Management System. In a few words, a LIMS is a software that helps you manage all information related to your laboratory. Think about how labs manage information today. It can be in different formats: reports, spreadsheets, presentations, images from microscopy etc.

Now, imagine how they usually store this information: in different files, folders, paper notebooks, on different computers or perhaps on a server.

This unstructured way to manage information leads to time consuming tasks and can ultimately lead to the loss of data. A report done by Atrium Research between 2005 and 2014 showed that the most important challenge of R&D has not changed for almost 10 years – and that is finding the information when needed!

LIMS are increasingly adopted by Labs, growing by 30% per year.

The major advantages of using a LIMS is to provide a centralized and structured platform to share scientific data between staff or collaborators, making dynamic inventories and giving a full traceability of your research activities that a lab needs.

Using a LIMS also makes it easier to comply with good laboratory practice! In a few words: a LIMS  software allows you to gain a lot of time in terms of management!






Step 2: Customize your System

Each laboratory has its specificities and needs. If you choose the LIMS, you will be able to adapt it to your need and get the best out of it. For example, the LIMS called LabCollector offers you the possibility to create ‘bricks’ (modules) that you need to enter all the information of your lab, in addition to the basic frame of the LIMS. So you can choose what you need!

For example, a digital lab notebook is a must-have in any modern lab.

The time of the paper notebook is definitely behind us, and has been proven to be time-wasting and unsustainable (imagine the space you need for archives and the danger of losing data). However, keeping a record of how and why decisions and results were obtained during the experiments and observations is essential.

And since experiments are repeated over and over, this repository of research data over time can be lost in paper notebooks…

An electronic lab notebook (ELN) can instead store all your experimental data. The easy search tool provided by an ELN offers researchers the ability to gather information, learn from others and make faster decisions.

An ELN also gives you more flexibility than a paper notebook. You can annotate your experiments and organize them in folders with an easy workflow, avoiding the classic order of a paper version, which needs to be chronological.

An ELN can then be simply shared with your colleagues, grouped by project and have multiple collaborators. When choosing an ELN, you have to find the balance between flexibility and regulatory compliance.






Step 3: Implement your system to gain efficiency

Organizing your lab, boxes and fridges is the first step to put an efficient system in place. Any data in the LIMS, from your samples to your unit of storage, is identified by a unique code, optimizing the traceability in your lab. These unique identification codes can be printed as barcodes.

For that, you will probably need adapted supplies to make your lab a truly automated workspace. You can start with a labelling device and a simple barcode reader. Each of your samples can be easily labeled and stored, so information can be easily retrieved. This way, you no longer have the trouble of unreadable information on tubes, or annotations which fade over time.

Imagine a single unique form to easily annotate your tubes – and long-term lasting labels resistant to extreme conditions (e.g. high and low temperatures).

The barcode will allow you to retrieve and update relevant data on the sample with one click (e.g. the origin, the type of experiment, when it has been used for the last time etc.). Your LIMS will then store all this data. Once retrieved and the barcode read, another lab member can quickly understand the importance of this sample, even years later!

Your equipments can be easily upgraded with data monitors, centralizing all monitoring and automatization of results inside the LIMS.

You can have a look at this online shop to find all relevant equipment to implement in your automatized lab:



Step 4: Change the Mindset

Trying to change an old lab management system can be tough, and facing the conservative mindset of users is certainly challenging. The best way to make a change is to therefore try it first!

Use the free version of LabCollector for a trial period (e.g. 1 month) and try it in your lab (in parallel with your existing system). These results might be enough to convince everybody!

And if they give you the age-old argument of ‘cost’, then show them the benefits of this investment:

1.     Having a collaborative environment in your lab

2.     Finding any information (samples or reagents storage, protocols, etc..) in seconds

3.     Organizing your inventory and keeping track of reagents orders with automatic alerts

4.     Following-up your expenses and budget

5.     Easily complying with Laboratory Best Practices.







Step 5: Save time and money!

The implementation of a LIMS requires a starting investment. But this investment can be rapidly covered by the gain your lab will make in term of time (‘time is money!‘).

A report published in Scientific Computing & Instrumentation revealed that organizations that have implemented ELN for their R&D have gained efficiencies in terms of research, quality of data and a searchable repository of knowledge. These organizations have also enhanced their ability to protect intellectual property.

Wockhardt, a CMO operating worldwide with a production facility of 16,000 m² and based in the UK, tried to implement a LIMS in its process. Over a three-year period, the team estimated that the automation of the laboratory would save between 5 and 10 minutes per sample. The team assumed this time would allow a 5% increase in the number of samples received per annum.

The anticipated volume increases equated with cost savings of around €200,000 over a three year period! That’s enough to implement any fully-automated system!

Once again, the time of digitalization has come to our lab workspaces. Digital notebooks and online data are the new rule for efficient work on the bench. We hope this post would be useful for you and your colleagues and thanks again to AgileBio for their support to make this post.

For those who want to try LabCollector, you can download the FREE VERSION HERE. A perfect opportunity to try it 😉

About LabCollector LIMS: first developed for Life Science applications, LabCollector is an extensive solution to manage any R&D lab activities. LabCollector is an all-in-one solution with all the features needed in a modern laboratory, adapting to a simple usage to complexes workflows with equipment integration. It is also fully suitable to any type of lab, from research to analytical and diagnostic labs. See the video below for more details.

How the LCSB monitors temperatures and other sensors

Nicolas BonjeanNicolas Bonjean is the Lab Coordinator of  the LCSB                      (Luxembourg Centre for Systems Biomedicine), affiliated to the University of Luxembourg.
The LCSB is accelerating biomedical research by closing the link between systems biology and medical research.
Collaboration between biologists, medical doctors, computer scientists, physicists and mathematicians is offering new
insights in complex systems like cells, organs, and organisms.
These insights are essential for understanding principal
mechanisms of disease pathogenesis and for developing new tools in diagnostics and therapy.
The LCSB has put in place a support group to enable the researchers to focus on their research.
All the logistics of about 250 researchers is organized by the Support biotech team using the Labcollector software.
A reagent to buy, an equipment to book, … everything runs smoothly in a few clicks.

Their research activities require to track all kind of sensors  such as temperature, humidity, pressure, gas, and light.
Monitoring all ULT freezers (-80°C) is essential for the biobanking activity of all research teams working at the LCSB. Nicolas Bonjean also decided to expand this monitoring to all bench freezers and special rooms.
The LCSB supply in CO2 is maintained by redundant bottles linked to an alarm switch.
All these sensors are totally integrated in LabCollector add-on: logger. The add-on receives all data from different hardware suppliers.

AgileBio provides an all-in-one solution with an easy plug-and-play AgileBio data logger and digital temperature sensors (-55°C/+125°C)A complete range of sensors are available. In complement to AgileBio hardware, the LCSB also has in place several wireless ULT sensors and switches from Rmoni.

Sensors monitoring

Sensors monitoring

Nicolas Bonjean and his team rely on our LabCollector add-on: Temperature logger for real time tracking and monitoring their freezers, rooms, storage, gas bottles… Water production is next!

Sensors monitoring

Sensors monitoring would not make sense without a real time alerting system. LabCollector provides this with a GSM box configured and fine-tuned to escalate alerts to several contacts depending on precise schedules.

LabCollector data/sensors logging has proved to be reliable and monitoring for the LCSB a variety of more than 200 sensors.




LabCollector ranked in SPECTRA ANALYSE Magazine n°307 among the BEST LIMS/ELN editors

LabCollector in the 15 best LIMS editors

LIMSIn third position regarding the number of client laboratories worldwide.
AgileBio team specificity comes from its scientific background,
and the capacity to understand the end-users, which results by a major part of their market in R&D, Biotechnologies, Pharmaceutical and cosmetics.
LabCollector-ELN combines a powerful LIMS, which optimizes samples traceability and sharing of resources, together with the electronic lab notebook, a centralized and structured way to annotate experiments.


AgileBio organize the first LabCollector LIMS Networking event in Lyon on the 9th of February 2016

LabCollector-event-LyonLabCollector team cordially  invite you to our first meeting and networking event around LabCollector LIMS implementation and features.

LabCollector is a customizable LIMS with 13 years of expertise in the LIMS implementation in laboratories and with over 600 client worldwide in a variety of sectors, going from academia, R&D, biotechs, biobanking to analysis laboratories.

During this 1st LabCollector Meeting, a series of short presentations will be done by our team Pierre Rodrigues – PhD Pasteur, Sarah Rodrigues Moreira – PhD CEA, Anne-Laure Sauvadet – PhD Paris 6) covering a range of solutions proposed by LabCollector.

Guest speakers will present how LabCollector have contributed to their data management. Dr. E. Durand will give the example of the implementation of LabCollector in a NGS laboratory, and Dr. C. Bouillon will present the successful implementation of LabCollector at the Luxembourg University.

Prelimary Program :

10h30 – 11h00 > Welcoming the participants

11h00 – 11h15 > Opening: AgileBio Introduction (Pierre Rodrigues)

11h15 – 11h45 > LabCollector usage and novelties (Sarah Rodrigues)

11h45 – 13h30 > Buffet

13h30 – 14h00 > Guest Speaker: Dr C. Bouillon (Luxembourg Centre for Systems Biomedicine) : LabCollector at the scale of an Institute

14h00 – 14h45 > Traceability tools: ELN, Workflow et Lab Service Manager (AL Sauvadet)

15h00 – 15h30 > Guest Spearker Dr. E. Durand (Institut Biologique de Lille, IBL):  Next Generation Sequencing Plaftorm manage by LabCollector

15h30 – 16h00 > Q&A Session

16h00 – 17h00 > Networking time
For more information and to register for the event, check our page: http://labcollector.wix.com/event-lyon-2015

How INRA lab improved sample storage

Dr Boulanger.
“ I’m a research engineer in the INRA research center of Jouy en Josas, near Paris. Dr Boulanger
I’m involved in the production of animal models by genome editing in our transgenesis facility named HOMOLOGOUS. In my job, i need to manage a lot of plasmids, primers, DNA, RNA, frozen cells and documents and LabCollector is clearly my prefered LIMS to control the activity of our transgenesis facilities. ”

With more than 15000 samples data sheets well identified with a unique number, we can not imagine going back to an excel file management!




Mrs Monnoye, technician in Dr Boulanger’s team.

Mrs MonnoyeMrs Monnoye 2I work in the transgenesis facility in the « Biologie du développement et reproduction » unit in the INRA research center of Jouy en Josas.  I produce more than 20 new plasmids each week and i manage each intermediate plasmid in order to reuse them in other projects.

For this work, LabCollector helps me each day in my research work.
I am today responsible to form new users to LabCollector.  I am also responsible of the quality in our team and LC is my first help and i find new applications to manage quality in our team. The last one is the management of the paper lab note books in the unit with the documents’s module of LabCollector.  We can associate, for example the team manager, the student, the project with key words and many other informations concerning each note book.  Then, with the unique number associated with each data sheet of LC and that we write on the note books , it is very easy to find them back. ”


LabCollector and selected accessories bring seamless sample storage!

“ We bought a computer on which a small label printer BRADY and a 2D barcode reader are connected.  This system is situated directly in our lab in order to control samples and print the labels near the work bench.  ”



To save an place in a box for one sample, it is as easy as a scan in your supermarket just choose a place in the storage browser, and scan the label.  The data sheet will be associated to the selected place.

AGILEBIO-photos-BDR-a2015-03-03 . AGILEBIO photos BDR 2015 034 03    AGILEBIO-photos-BDR-2015-03-0d3


“ We still need to make some manual activities for sticking the labels on small tubes but it is also possible to use prelabelled plastic tubes and use the preprinted 1D barcode in labcollector in order to associate a sample data sheet with a tube.
In the storage browser, you can see the filling ratio of your boxes like when you are usually in front of your freezer.  We sometimes print the plane of the box for control of each sample. ”



The unique identification number also concerns the box for your samples. Each box has a unique number and a unique position in all the storage freezers.
It’s now not necessary anymore to stay in front of your minus 80 freezer trying to know where is your box!



Topped with the Electronic Lab Notebook add-on!

“ We use the electronic lab notebook for follow our experiments.  The possibility to share, print and save our books in a PDF format is much more easier to work with than with a paper book. We can transfer pictures of agarose gels, results of immunochemistry , maps of plasmids etc.  It is also possible to make a link between an experiment page with our samples managed by LabCollector.  It is theneasy to find back the good sample associated with one experiment. ”